\(\renewcommand{\AA}{\text{Å}}\)

# compute temp/partial command

## Syntax

```
compute ID group-ID temp/partial xflag yflag zflag
```

ID, group-ID are documented in compute command

temp/partial = style name of this compute command

xflag,yflag,zflag = 0/1 for whether to exclude/include this dimension

## Examples

```
compute newT flow temp/partial 1 1 0
```

## Description

Define a computation that calculates the temperature of a group of atoms, after excluding one or more velocity components. A compute of this style can be used by any command that computes a temperature (e.g. thermo_modify, fix temp/rescale, fix npt).

The temperature is calculated by the formula

where KE is the total kinetic energy of the group of atoms (sum of
\(\frac12 m v^2\)), dim = 2 or 3 is the dimensionality of the simulation,
\(N\) is the number of atoms in the group, \(k_B\) is the Boltzmann
constant, and \(T\) = temperature. The calculation of KE excludes the
\(x\), \(y\), or \(z\) dimensions if *xflag*, *yflag*, or *zflag*
is 0. The dim parameter is adjusted to give the correct number of
degrees of freedom.

A kinetic energy tensor, stored as a six-element vector, is also calculated by this compute for use in the calculation of a pressure tensor. The formula for the components of the tensor is the same as the above formula, except that \(v^2\) is replaced by \(v_x v_y\) for the \(xy\) component, and so on. The six components of the vector are ordered \(xx\), \(yy\), \(zz\), \(xy\), \(xz\), \(yz\).

The number of atoms contributing to the temperature is assumed to be
constant for the duration of the run; use the *dynamic* option of the
compute_modify command if this is not the case.

The removal of velocity components by this fix is essentially computing the temperature after a “bias” has been removed from the velocity of the atoms. If this compute is used with a fix command that performs thermostatting then this bias will be subtracted from each atom, thermostatting of the remaining thermal velocity will be performed, and the bias will be added back in. Thermostatting fixes that work in this way include fix nvt, fix temp/rescale, fix temp/berendsen, and fix langevin.

This compute subtracts out degrees-of-freedom due to fixes that
constrain molecular motion, such as fix shake and
fix rigid. This means the temperature of groups of
atoms that include these constraints will be computed correctly. If
needed, the subtracted degrees-of-freedom can be altered using the
*extra* option of the compute_modify command.

See the Howto thermostat page for a discussion of different ways to compute temperature and perform thermostatting.

Styles with a *gpu*, *intel*, *kk*, *omp*, or *opt* suffix are
functionally the same as the corresponding style without the suffix.
They have been optimized to run faster, depending on your available
hardware, as discussed on the Accelerator packages
page. The accelerated styles take the same arguments and should
produce the same results, except for round-off and precision issues.

These accelerated styles are part of the GPU, INTEL, KOKKOS, OPENMP, and OPT packages, respectively. They are only enabled if LAMMPS was built with those packages. See the Build package page for more info.

You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the -suffix command-line switch when you invoke LAMMPS, or you can use the suffix command in your input script.

See the Accelerator packages page for more instructions on how to use the accelerated styles effectively.

## Output info

This compute calculates a global scalar (the temperature) and a global vector of length 6 (KE tensor), which can be accessed by indices 1–6. These values can be used by any command that uses global scalar or vector values from a compute as input. See the Howto output page for an overview of LAMMPS output options.

The scalar value calculated by this compute is “intensive”. The vector values are “extensive”.

The scalar value will be in temperature units. The vector values will be in energy units.

## Restrictions

none

## Default

none